Created Issue: bcftools view doesn't read from stdin correctly [465]
This does not work:C:\Users\jlick\Desktop\DNA\James Lick>samtools view -u LF7687.bam MT | samtools mpileup -uf rCRS.fasta - | bcftools view -v - > out.vcf[mpileup] 1 samples in 1 input...
View ArticleCommented Issue: bcftools view doesn't read from stdin correctly [465]
This does not work:C:\Users\jlick\Desktop\DNA\James Lick>samtools view -u LF7687.bam MT | samtools mpileup -uf rCRS.fasta - | bcftools view -v - > out.vcf[mpileup] 1 samples in 1 input...
View ArticleClosed Issue: bcftools view doesn't read from stdin correctly [465]
This does not work:C:\Users\jlick\Desktop\DNA\James Lick>samtools view -u LF7687.bam MT | samtools mpileup -uf rCRS.fasta - | bcftools view -v - > out.vcf[mpileup] 1 samples in 1 input...
View ArticleCreated Issue: bwa aln creates 0 length sai on Windows server 2008 R2 [552]
Hi,I appreciate your effort in porting BWA to windows. It's of great help.I tried running "bwa aln" in windows server 2008 R2 environment and it creates a zero length .sai file. I am using the index...
View ArticleCommented Issue: bwa aln creates 0 length sai [552]
Hi,I appreciate your effort in porting BWA to windows. It's of great help.I tried running "bwa aln" and it creates a zero length .sai file. I am using the index built from a linux host. Is that a valid...
View ArticleCommented Issue: bwa aln creates 0 length sai [552]
Hi,I appreciate your effort in porting BWA to windows. It's of great help.I tried running "bwa aln" and it creates a zero length .sai file. I am using the index built from a linux host. Is that a valid...
View ArticleClosed Issue: bwa aln creates 0 length sai [552]
Hi,I appreciate your effort in porting BWA to windows. It's of great help.I tried running "bwa aln" and it creates a zero length .sai file. I am using the index built from a linux host. Is that a valid...
View ArticleCreated Unassigned: bwa sampe not working [811]
I am trying to run a bwa alignment on a windows machine. I am able to index and use aln command, but am not able to run bwa sampe. I even tried running without multithreading and still faced the same...
View ArticleCommented Unassigned: bwa sampe not working [811]
I am trying to run a bwa alignment on a windows machine. I am able to index and use aln command, but am not able to run bwa sampe. I even tried running without multithreading and still faced the same...
View ArticleCommented Unassigned: bwa sampe not working [811]
I am trying to run a bwa alignment on a windows machine. I am able to index and use aln command, but am not able to run bwa sampe. I even tried running without multithreading and still faced the same...
View ArticleCommented Unassigned: bwa sampe not working [811]
I am trying to run a bwa alignment on a windows machine. I am able to index and use aln command, but am not able to run bwa sampe. I even tried running without multithreading and still faced the same...
View ArticleClosed Unassigned: bwa sampe not working [811]
I am trying to run a bwa alignment on a windows machine. I am able to index and use aln command, but am not able to run bwa sampe. I even tried running without multithreading and still faced the same...
View ArticleCreated Unassigned: BWA - Samse command [979]
Hi Dong,I am using your program in conjunction with the TASSEL 3 Genotyping By Sequencing Pipeline, which requires the command 'samse' to convert an .sai file to a .sam file. The example command is:bwa...
View ArticleCommented Unassigned: BWA - Samse command [979]
Hi Dong,I am using your program in conjunction with the TASSEL 3 Genotyping By Sequencing Pipeline, which requires the command 'samse' to convert an .sai file to a .sam file. The example command is:bwa...
View ArticleCommented Unassigned: BWA - Samse command [979]
Hi Dong,I am using your program in conjunction with the TASSEL 3 Genotyping By Sequencing Pipeline, which requires the command 'samse' to convert an .sai file to a .sam file. The example command is:bwa...
View ArticleCommented Unassigned: BWA - Samse command [979]
Hi Dong,I am using your program in conjunction with the TASSEL 3 Genotyping By Sequencing Pipeline, which requires the command 'samse' to convert an .sai file to a .sam file. The example command is:bwa...
View Article